Healthcare Cost and Utilization Project (HCUP)

http://www.hcup-us.ahrq.gov/

Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)

https://biolincc.nhlbi.nih.gov/home/

Biospecimens/Biorepositories: Rare Disease Hub (RD-HUB)

http://biospecimens.ordr.info.nih.gov/

dbGaP

http://www.ncbi.nlm.nih.gov/gap

Federal Interagency Traumatic Brain Injury Research (FITBIR) Informatics System

https://fitbir.nih.gov/

Inter-university Consortium for Political and Social Research (ICPSR)

https://www.icpsr.umich.edu/icpsrweb/landing.jsp

National Addiction & HIV Data Archive Program (NAHDAP)

http://www.icpsr.umich.edu/icpsrweb/NAHDAP/

National Database for Autism Research

ndar.nih.gov

NIDA Center on Genetics Studies

https://nidagenetics.org/

NIDDK Central Repository

https://www.niddkrepository.org/home/

Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)

https://pdbp.ninds.nih.gov/

Parkinson’s Progression Markers Initiative

http://www.ppmi-info.org/

National Sleep Research Resource

http://sleepdata.org/

The Immunology Database and Analysis Portal (ImmPort)

https://immport.niaid.nih.gov/immportWeb/home/home.do?loginType=full

Biological General Repository for Interaction Datasets (BioGRID)

http://thebiogrid.org/

Cell Centred Database (CCDB)

http://ccdb.ucsd.edu/index.shtm

Chemical Effects in Biological Systems (CEBS)

http://tools.niehs.nih.gov/cebs3/ui/

ClinicalTrials.gov

https://clinicaltrials.gov/

CTN Data Share

https://datashare.nida.nih.gov/

dbSNP

http://www.ncbi.nlm.nih.gov/SNP/

dbVar

http://www.ncbi.nlm.nih.gov/dbvar/

Eukaryotic Pathogen Database Resources (EuPathDB)

http://eupathdb.org/eupathdb/

Europe PMC

http://europepmc.org/

FlyBase: A Drosophila Genomic and Genetic Database

http://flybase.org/

GenBank

http://www.ncbi.nlm.nih.gov/genbank

Gene Expression Omnibus (GEO)

http://www.ncbi.nlm.nih.gov/geo/

Gene Ontology

geneontology.org/

Influenza Research Database (IRD)

http://www.fludb.org/brc/home.spg?decorator=influenza

International Human Epigenome Consortium (IHEC) Data Portal

http://epigenomesportal.ca/ihec/

Kegg

www.genome.jp/kegg/kegg1.html

miRBase

www.mirbase.org

Mouse genome database

http://phenome.jax.org/

Mouse Phenome Database (MPD)

-

Nanomaterial Registry

https://www.nanomaterialregistry.org/

NCBI databases

www.ncbi.nlm.nih.gov/guide/all/

NCBO BioPortal

bioportal.bioontology.org/

NeuroMorpho.org

http://neuromorpho.org/neuroMorpho/index.jsp

Neuroscience Information Framework (NIF)

http://www.neuinfo.org/

NIDDK database

scicrunch.org/dknet/Data/search?q=

Nuclear Receptor Signaling Atlas (NURSA)

https://www.nursa.org/nursa/index.jsf

OBO Foundry

www.obofoundry.org/

Open Science Framework

http://osf.io/

Panther

pantherdb.org/

Pathway Commons

www.pathwaycommons.org/about/

PeptideAtlas

http://www.peptideatlas.org/

PMC

http://www.ncbi.nlm.nih.gov/pmc/

Protein Data Bank (PDB)

http://www.rcsb.org/pdb/home/home.do

PubChem

pubchem.ncbi.nlm.nih.gov/

Quantitative Trait Loci (QTL) Archive

http://phenome.jax.org/db/q?rtn=qtl/home

Rat Genome Database (RGD)

rgd.mcw.edu/wg/home

RxNorm

www.nlm.nih.gov/research/umls/rxnorm/

Sequence Read Archive (SRA)

http://www.ncbi.nlm.nih.gov/sra/

The Cancer Imaging Archive (TCIA)

http://www.cancerimagingarchive.net/

The Zebrafish Model Organism Database (ZFIN)

http://zfin.org/

Transporter Classification Database (TCDB)

http://www.tcdb.org/

UCSC Genome Browser

genome.ucsc.edu/

Uniprot

www.uniprot.org/

VectorBase

https://www.vectorbase.org/

WormBase

https://www.wormbase.org/#01-23-6

Xenbase

http://www.xenbase.org/entry/

PubRef

-

GitHub

https://github.com

eumicrobedb

http://eumicrobedb.org/

bgagenomicsdb

http://www.bgagenomics.iicb.res.in/

WikiPathways

http://www.wikipathways.org

SNPedia

www.SNPedia.com

BEI Resource Repository

https://www.beiresources.org/

Database of Interacting Proteins (DIP)

http://dip.doe-mbi.ucla.edu/dip/Main.cgi

GeneNetwork

http://www.genenetwork.org/webqtl/main.py

Human Connectome Project

http://www.humanconnectome.org/

Integrating Data for Analysis, Anonymization, and Sharing (iDASH)

https://idash.ucsd.edu/

LONI Database

https://ida.loni.usc.edu/login.jsp

Multiparameter Intelligent Monitoring in Intensive Care II (MIMIC-II)

https://mimic.physionet.org/database.html

Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)

https://www.nitrc.org/

NIDCR FaceBase

www.facebase.org/

NIMH Limited Access Clinical Trial Datasets

http://www.nimh.nih.gov/funding/clinical-research/datasets/nimh-procedures-for-requesting-data-sets.shtml

NITRC-IR

www.nitrc.org/ir/app/template/Search.vm/node/projectData.a

OpenfMRI

http://openfmri.org/

TCGA

tcga-data.nci.nih.gov/tcga/

The 1000 Functional Connectomes Project (FCP) / International Neuroimaging Data-Sharing Initiative (INDI)

http://fcon_1000.projects.nitrc.org/

The Cardiovascular Research Grid (CVRG)

http://cvrgrid.org/

TrialShare

https://www.itntrialshare.org/

National Archive of Computerized Data on Aging (NACDA)

http://www.icpsr.umich.edu/icpsrweb/NACDA/

Gateway to Global Aging Data (G2Aging)

https://www.g2aging.org/

Autism Brain Imaging Data Exchange (ABIDE)

fcon_1000.projects.nitrc.org/indi/abide/

(Encuesta Nacional de Salud y Nutricion (Health and Nutrition National Survey of Mexico) (ENSANUT)

http://ensanut.insp.mx

Korean Longitudinal Study of Ageing (KLoSA)

http://www.kli.re.kr/kli/

Mexican Health and Aging Study (MHAS)

www.mhasweb.org

PhenoExplorer

phenoexplorer.org/

Physionet

www.physionet.org/physiobank/

Metabolomics workbench

www.metabolomicsworkbench.org/

BIRN

Emerge database

emerge.mc.vanderbilt.edu/

Healthdata.gov

http://www.healthdata.gov/

Intermine

http://intermine.org/

LINCS

www.lincsproject.org/data/data-releases/

NCI cloud database

cbiit.nci.nih.gov/ncip/biomedical-informatics-resources/data

NeuroLex.org

http://neurolex.org

NIH Human Microbiome Project

hmpdacc.org/resources/data_browser.php

OpenConnectome

openconnecto.me

SIB Bioinformatics Portal

www.expasy.org/

gramene

http://www.gramene.org

3d Brain Atlas Reconstructor

http://www.3dbars.org/

Brain Slices

https://brainslices.org/

Reactome

http://www.reactome.org